Chem 472 | Spring 2007 | Biochemistry Laboratory

Instructor: Michael C. Mossing, 452 Coulter, 915-5339, mmossing@olemiss.edu
Laboratory Schedule: 1 to 4 pm, MTuWTh 404 Coulter, (Most experiments require 1 or 2 days)
Lecture Schedule: Fri 2 - 2:50 pm, 200 Coulter (not every Friday, occasional)
Text: Fundamental Laboratory Approaches to Biochemistry and Biotechnology
A.J. Ninfa and D. Ballou, (1998), Fitzgerald Science Press, Inc., Bethesda, MD
URL: http://www.olemiss.edu/depts/chemistry/courses/chem472/
Syllabus in (PDF | MSWord) Teaching Assistants: Lei Wang and Yin Gu

Last Updated: Tuesday, 01-May-2007 12:47:23 CDT

News

2007/01/16 10:04 AM Note: These are last year's protocols and schedule, they are slightly different from the printed syllabus and may be subject to change as the semester goes along. Updates will be posted here.

Week Date (Mon) Topic Reading
1* 19-Jan-06 Orientation meeting Fri 1pm 200 Coulter, Choose lab groups
NB Ch. 1
2 22-Jan-06 PNP Spectroscopy | Expt. 1
Protocol - PDF | Report outline - PDF - RTF
Pipetman Manual (PDF) | pH lecture (PDF)
NB Ch. 2
3 29-Jan-06 Protein and DNA quantitation | Expt 2
Protocol - PDF - RTF | Report outline - PDF - RTF
NB Ch. 3
4 5-Feb-06 Chromatography | Expt. 3 NB Ch. 4
5 12-Feb-06 Protein Electrophoresis | Expt. 4
Sample Gel (PDF) | Report outline (Expts. 3 and 4)- PDF - RTF
NB Ch. 5
6 19-Feb-06 Plasmid Purification | Expt. 5 (NB 11-4)
Protocol - PDF - RTF |
Report outline - Will be combined with Expt 6
NB Ch. 11
7 26-Feb-06 Restriction and DNA Electrophoresis NB Ch. 11
8 5-Mar-06 Sequence Analysis
Sequence files and links to analysis programs
Report outline - Expt5 + Expt6 PDF - RTF
NB Ch. 11
12-Mar-06 Spring Break
9 19-Mar-06 PCR analysis | Diagram of Plasmid Integration (PDF)
Protocol 6a - PDF - RTF |
Web exercise to predict PCR products
- Report outline - Expt6a PDF - RTF
NB Ch. 12
10 26-Mar-07 Enzyme Purification NB Ch. 6
11 2-Apr-07
Google Groups Beta
UMChem472
Visit this group
15 8-May-06 Turn in Final report
Report outline - Expt7 PDF - RTF

This laboratory course in biochemistry will provide hands-on instruction in basic biochemical techniques. We will focus on the production, purification, and analysis of proteins and nucleic acids. After a series of textbook experiments to get familiar with standard biochemical techniques, Each lab group will research, design and test one laboratory experiment. A detailed experimental protocol and model lab report will count for 20% of the grade for the course. The remaining 80% will be determined by 10 laboratory reports.

In addition, those enrolled in the graduate course Chemistry 672 will be required to perform an integrated long-term experiment of their choice throughout the course of the semester. Experiments might include, modification and cloning of a gene for protein production in E. coli, followed by expression and purification of the desired protein.

Required materials:

  1. Textbook: Fundamental Laboratory Approaches for Biochemistry and Biotechnology by Alexander J. Ninfa and David P. Ballou
  2. Bound laboratory notebook (from Scientific Notebook - available in the stockroom).
  3. Safety Goggles.
  4. PC-formatted floppy disk for data files

Sample protocols and lab report outlines from 2005 are available at: http://www.olemiss.edu/depts/chemistry/courses/chem472_05/